PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015332
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 193aa    MW: 21908.4 Da    PI: 7.3823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015332genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18755254
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
               +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Cla015332  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
               69******9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-33666No hitNo description
SuperFamilySSF541711.05E-20765IPR016177DNA-binding domain
PfamPF008472.2E-11756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-34764IPR001471AP2/ERF domain
SMARTSM003802.8E-41770IPR001471AP2/ERF domain
PROSITE profilePS5103220.732764IPR001471AP2/ERF domain
PRINTSPR003673.2E-11819IPR001471AP2/ERF domain
PRINTSPR003673.2E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPKAR  60
TNFQYNPNDQ QSSSSSSSSS SKLLPAALIA KLHKCHLASL QIAKKHVHRQ HPGFEPNYTA  120
YGGSPPPSIA GTTTGPWTPE DTWVYSDEGQ MEMNNNNNNN NIHHQQCLQP LEDDHIEQMI  180
QELLHLGPFE IIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-16663159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818046e-31LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132556e-31LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461170.11e-108PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-63ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0A0KA121e-102A0A0A0KA12_CUCSA; Uncharacterized protein
STRINGPOPTR_0006s27710.11e-68(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-51ERF family protein